PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400024044
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 552aa    MW: 60887.5 Da    PI: 6.4642
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400024044genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.62.3e-11179235155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  PGSC0003DMP400024044 179 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 235
                           57*******************5444.2455536655.779999**************98 PP

2AP247.54.6e-15280329355
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  PGSC0003DMP400024044 280 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFTTEEEAAEAYDIAAIKFRG 329
                           9***************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.2E-9179235IPR001471AP2/ERF domain
CDDcd000184.63E-20179245No hitNo description
SuperFamilySSF541717.85E-15179245IPR016177DNA-binding domain
PROSITE profilePS5103217.504180243IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-12180244IPR001471AP2/ERF domain
SMARTSM003803.2E-23180249IPR001471AP2/ERF domain
PRINTSPR003673.7E-6181192IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18278338IPR016177DNA-binding domain
CDDcd000184.59E-24278337No hitNo description
PROSITE profilePS5103219.296279337IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-18279337IPR001471AP2/ERF domain
SMARTSM003801.1E-31279343IPR001471AP2/ERF domain
PfamPF008472.8E-9280329IPR001471AP2/ERF domain
PRINTSPR003673.7E-6319339IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010073Biological Processmeristem maintenance
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MNSNNWLSFP LSPTHSSLPP HLQNDQSHHF SLGLVNETID NPFQNQEWNL MNTQGSNEVP  60
KVADFLGMNK SENQSELIPY NEIQANDSDY LFQNNHLMPS MQNALAPPPT SNYDLQENAC  120
NIQSLTLSMG SGKGSTSETS ASPSATAATA SASAENSNNT SIVEAAPRRT LDTFGQRTSI  180
YRGVTRHRWT GRYEAHLWDN SCRREGQSRK GRQGGYDKEE KAARAYDLAA LKYWGTSTTT  240
NFPISNYEKE CEDMKHMTRQ EFVAAIRRKS SGFSRGASMY RGVTRHHQHG RWQARIGRVA  300
GNKDLYLGTF TTEEEAAEAY DIAAIKFRGL NAVTNFDMNR YDVKAILESN TLPIGGGAAK  360
RLKEAQALES SRKRDQEMMA LNSSFQYGNS NPLQAYPLMQ QQPSFDNSQP LLTLQNHDIS  420
QYNIQDSSSH FHQSYLQTQL QLQNNSHQVL YNNYLQNNQV FLHGLMNNNE GSSSGSYSTG  480
GYFGNSPGLG GMSSNSTSGN NGGGGGGSGS VAHEEVALVK VDYDNIPSYN GWSGESSVQG  540
SNPGVFSMWN E*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015167206.10.0PREDICTED: AP2-like ethylene-responsive transcription factor PLT2
SwissprotQ5YGP70.0PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2
TrEMBLM1B2650.0M1B265_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000353540.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22462457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.10.0AP2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]